The Seed Biology Place

Plant Physiology 155: 1851-1870 (2011)

**Regulation of seed germination in the close Arabidopsis relative Lepidium sativum: A global tissue specific transcript analysis**

Karl Morris, Ada Linkies, Kerstin Müller, Krystyna Oracz, Xiaofeng Wang, James R. Lynn, Gerhard Leubner-Metzger, William E. Finch-Savage

School of Life Sciences, Warwick University, Wellesbourne, Warwick CV35 9EF, UK (Ka.M., J.R.L., W.E.F.-S.)
University of Freiburg, Faculty of Biology, Institute for Biology II, Botany / Plant Physiology, Schänzlestr. 1, D-79104 Freiburg, Germany (A.L., Ke.M., K.O., G.L.-M.)
College of Life Sciences, South China Agricultural University, Guangzhou 510642, China (X.W.)
Department of Biological Sciences, Simon Fraser University, 8888 University Drive, Burnaby BC V5A 1S6, Canada (Ke.M.)

Received November 23, 2010; accepted February 7, 2011; published February 14, 2011
DOI 10.1104/pp.110.169706

	CAP				RAD				Common
Tags	8h	18h	30h	96h	8h	18h	30h	96h	8h	18h	30h	96h
Dormancy related	14	29	21	16	54	28	31	45	146	153	166	162
Germination related	6	6	3	6	10	3	3	3	28	30	33	32
ABA	17	40	34	23	43	24	26	32	125	124	132	137
Auxin	15	31	36	21	39	25	23	32	113	111	109	116
Brassinosteroid	1	1	4	3	12	7	6	8	22	26	23	21
Cytokinin	7	10	7	8	15	5	8	7	20	19	23	22
Ethylene	3	13	7	6	26	10	17	16	57	55	55	57
Gibberellin	5	10	12	7	10	2	7	9	35	35	33	35
Jasmonic acid	4	15	10	10	10	4	2	8	24	25	26	24
Seed storageproteins/Late EmbryogenesisAbundant	7	15	13	17	25	13	11	17	46	52	56	49
Inhibition of protein degradation	1	5	4	3	5	2	2	2	10	10	13	15
Protein degradation	16	53	55	64	95	42	48	55	285	310	300	292
Heat Shock	11	24	25	23	44	24	22	35	121	122	127	128
Cell-wall modification	19	49	46	40	57	41	38	50	130	118	128	131
Cell cycle related	15	32	44	25	60	37	30	46	157	177	175	157
Cytoskeleton	12	29	34	29	62	29	32	41	103	106	110	105
Translation associated	7	31	23	23	77	46	49	72	395	403	398	379
DNA repair	6	20	24	25	54	27	23	29	56	62	70	62
Respiration	1	0	1	3	3	3	2	3	12	14	14	14
Electron Transport	1	2	2	2	3	0	3	4	18	18	17	16
Pentose phosphate pathway	1	2	1	3	3	1	2	1	11	11	12	11
Glycolysis and gluconeogenesis	7	13	13	7	15	4	6	13	63	73	73	70
Krebs cycle	8	7	6	5	4	2	0	3	23	27	30	28
Beta oxidation	3	1	2	3	2	1	1	0	11	12	13	14
Stress	29	95	95	83	116	60	60	69	333	328	329	343
Photosynthesis/chloroplast related	80	244	202	191	408	196	164	265	1002	1031	1100	1084
Unannotated	3	6	2	5	5	4	6	7	18	17	18	19
Unclassified	618	1759	1602	1577	2830	1364	1281	1729	6052	6046	6452	6286
Total genes in lists	917	2542	2328	2228	4087	2004	1903	2601	9416	9515	10035	9809
Total genes classified above	299	783	726	651	1257	640	622	872	3364	3469	3583	3523
Percentageclassified	32.6	30.8	31.2	29.8	30.5	31.9	33.0	33.5	35.8	36.5	35.7	35.9

Supplemental Table S4. Proportional representation in functional categories of the GO-based seed-specific TAGGIT workflow (Carrera et al., 2007) of expressed ("present") genes on +ABA-arrays.

Article in PDF format (2.0 MB)
Supplemental Data File (3.1 MB)

Abstract

Figure 1         Figure 2         Figure 3         Figure 4         Figure 5         Figure 6
Figure 7         Figure 8         Table 1         Table 2         Suppl. Fig. S1     Suppl. Fig. S2
Supplemental Tables:       S1       S4       S5             Suppl. Excel Table Files S2, S3, S6

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